All categories
[category|SW.1|1. Cellular processes]
[category|SW.1.1|1.1. Cell envelope and cell division]
[category|SW.1.1.1|1.1.1. Cell wall synthesis]
[category|SW.1.1.1.1|1.1.1.1. Biosynthesis of peptidoglycan]
[category|SW.1.1.1.2|1.1.1.2. Autolytic activity required for peptidoglycan synthesis (cell elongation)]
[category|SW.1.1.1.3|1.1.1.3. Biosynthesis of lipoteichoic acid]
[category|SW.1.1.1.4|1.1.1.4. Biosynthesis of teichoic acid]
[category|SW.1.1.1.5|1.1.1.5. Biosynthesis of teichuronic acid]
[category|SW.1.1.1.6|1.1.1.6. Export of anionic polymers and attachment to peptidoglycan]
[category|SW.1.1.1.7|1.1.1.7. Penicillin-binding proteins]
[category|SW.1.1.1.8|1.1.1.8. Biosynthesis of the carrier lipid undecaprenylphosphate]
[category|SW.1.1.1.9|1.1.1.9. Flippases]
[category|SW.1.1.1.10|1.1.1.10. Scramblases]
[category|SW.1.1.2|1.1.2. Cell shape]
[category|SW.1.1.3|1.1.3. Cell wall degradation/ turnover]
[category|SW.1.1.3.1|1.1.3.1. Autolysis]
[category|SW.1.1.3.2|1.1.3.2. Autolysis/ based on similarity]
[category|SW.1.1.3.3|1.1.3.3. Utilization of cell wall components]
[category|SW.1.1.3.4|1.1.3.4. Endopeptidases]
[category|SW.1.1.3.5|1.1.3.5. N-acetyl-β-D-glucosaminidases]
[category|SW.1.1.3.6|1.1.3.6. Cell wall degradation/ turnover/ Additional genes]
[category|SW.1.1.4|1.1.4. Cell wall/ other]
[category|SW.1.1.5|1.1.5. Cell wall/ other/ based on similarity]
[category|SW.1.1.6|1.1.6. Membrane dynamics]
[category|SW.1.1.7|1.1.7. Cell division]
[category|SW.1.1.7.1|1.1.7.1. Min system]
[category|SW.1.1.7.2|1.1.7.2. Divisome]
[category|SW.1.1.7.3|1.1.7.3. Cell division/ based on homology]
[category|SW.1.2|1.2. Transporters]
[category|SW.1.2.1|1.2.1. ABC transporters]
[category|SW.1.2.1.1|1.2.1.1. Importers]
[category|SW.1.2.1.1.1|1.2.1.1.1. Uptake of carbon sources]
[category|SW.1.2.1.1.2|1.2.1.1.2. Uptake of amino acids]
[category|SW.1.2.1.1.3|1.2.1.1.3. Uptake of peptides]
[category|SW.1.2.1.1.4|1.2.1.1.4. Uptake of compatible solutes for osmoprotection]
[category|SW.1.2.1.1.5|1.2.1.1.5. Uptake of iron/ siderophores]
[category|SW.1.2.1.1.6|1.2.1.1.6. Uptake of ions]
[category|SW.1.2.1.1.8|1.2.1.1.8. ABC transporters with unknown substrates]
[category|SW.1.2.1.2|1.2.1.2. Exporters]
[category|SW.1.2.1.2.1|1.2.1.2.1. Efflux of antibiotics]
[category|SW.1.2.1.2.2|1.2.1.2.2. Export of antimicrobial substances]
[category|SW.1.2.1.2.3|1.2.1.2.3. Export of peptides]
[category|SW.1.2.1.2.4|1.2.1.2.4. Export of cell wall components]
[category|SW.1.2.1.2.5|1.2.1.2.5. Export of ions]
[category|SW.1.2.1.2.6|1.2.1.2.6. Exporters with unknown substrates]
[category|SW.1.2.1.3|1.2.1.3. Regulatory ABC transporters]
[category|SW.1.2.2|1.2.2. Phosphotransferase system]
[category|SW.1.2.2.1|1.2.2.1. General PTS proteins]
[category|SW.1.2.2.2|1.2.2.2. Sugar specific PTS proteins]
[category|SW.1.2.3|1.2.3. ECF transporter]
[category|SW.1.2.3.1|1.2.3.1. The general components of the ECF transporters]
[category|SW.1.2.3.2|1.2.3.2. The substrate-specific S components of the ECF transporters]
[category|SW.1.2.3.3|1.2.3.3. Class I ECF transporter]
[category|SW.1.2.4|1.2.4. Transporters/ other]
[category|SW.1.2.4.1|1.2.4.1. Amino acid transporters]
[category|SW.1.2.4.1.1|1.2.4.1.1. Solute:sodium symporter family]
[category|SW.1.2.4.1.2|1.2.4.1.2. Other amino acid transporters]
[category|SW.1.2.4.2|1.2.4.2. Peptide transporter]
[category|SW.1.2.4.3|1.2.4.3. Carbohydrate transporter]
[category|SW.1.2.4.4|1.2.4.4. Transporter for organic acids]
[category|SW.1.2.4.5|1.2.4.5. Metal ion transporter]
[category|SW.1.2.4.6|1.2.4.6. Nucleotide/ nucleoside transporter]
[category|SW.1.2.4.7|1.2.4.7. Transporter for cofactors]
[category|SW.1.2.4.8|1.2.4.8. Uptake of other small ions]
[category|SW.1.2.4.9|1.2.4.9. Uptake of compatible solutes]
[category|SW.1.2.4.10|1.2.4.10. Siderophore exporters]
[category|SW.1.2.4.11|1.2.4.11. Other exporters]
[category|SW.1.2.4.12|1.2.4.12. Other transporters]
[category|SW.1.2.4.13|1.2.4.13. Metal ion exporters]
[category|SW.1.2.4.14|1.2.4.14. Multidrug exporters]
[category|SW.1.3|1.3. Homeostasis]
[category|SW.1.3.1|1.3.1. Metal ion homeostasis (K, Na, Ca, Mg)]
[category|SW.1.3.1.1|1.3.1.1. Magnesium uptake/ efflux]
[category|SW.1.3.1.2|1.3.1.2. Sodium uptake/ export]
[category|SW.1.3.1.3|1.3.1.3. Potassium uptake/ export]
[category|SW.1.3.1.4|1.3.1.4. Metal ion homeostasis/ Other]
[category|SW.1.3.2|1.3.2. Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)]
[category|SW.1.3.2.1|1.3.2.1. Copper]
[category|SW.1.3.2.2|1.3.2.2. Manganese]
[category|SW.1.3.2.3|1.3.2.3. Zinc]
[category|SW.1.3.2.4|1.3.2.4. Trace metals/ Other]
[category|SW.1.3.3|1.3.3. Acquisition of iron]
[category|SW.1.3.3.1|1.3.3.1. ABC transporters for the uptake of iron/ siderophores]
[category|SW.1.3.3.2|1.3.3.2. Elemental iron transport system]
[category|SW.1.3.3.3|1.3.3.3. Acquisition of iron / Other]
[category|SW.1.3.4|1.3.4. Acquisition of iron/ based on similarity]
[category|SW.1.3.5|1.3.5. PH homeostasis]
[category|SW.2|2. Metabolism]
[category|SW.2.1|2.1. Electron transport and ATP synthesis]
[category|SW.2.1.1|2.1.1. Regulators of electron transport]
[category|SW.2.1.2|2.1.2. Respiration]
[category|SW.2.1.2.1|2.1.2.1. Terminal oxidases]
[category|SW.2.1.2.2|2.1.2.2. Anaerobic respiration]
[category|SW.2.1.2.3|2.1.2.3. Anaerobic respiration/based on similarity]
[category|SW.2.1.2.4|2.1.2.4. Respiration/ other]
[category|SW.2.1.3|2.1.3. Electron transport/ other]
[category|SW.2.1.4|2.1.4. Electron transport/ other/ based on similarity]
[category|SW.2.1.5|2.1.5. ATP synthesis]
[category|SW.2.1.5.1|2.1.5.1. ATPase]
[category|SW.2.1.5.2|2.1.5.2. Substrate-level phosphorylation]
[category|SW.2.2|2.2. Carbon metabolism]
[category|SW.2.2.1|2.2.1. Carbon core metabolism]
[category|SW.2.2.1.1|2.2.1.1. Glycolysis]
[category|SW.2.2.1.2|2.2.1.2. Gluconeogenesis]
[category|SW.2.2.1.3|2.2.1.3. Pentose phosphate pathway]
[category|SW.2.2.1.4|2.2.1.4. TCA cycle]
[category|SW.2.2.1.5|2.2.1.5. Overflow metabolism]
[category|SW.2.2.1.6|2.2.1.6. Pyruvate metabolism]
[category|SW.2.2.2|2.2.2. Utilization of specific carbon sources]
[category|SW.2.2.2.1|2.2.2.1. Utilization of organic acids]
[category|SW.2.2.2.2|2.2.2.2. Utilization of acetoin]
[category|SW.2.2.2.3|2.2.2.3. Utilization of glycerol/ glycerol-3-phosphate]
[category|SW.2.2.2.4|2.2.2.4. Utilization of ribose]
[category|SW.2.2.2.5|2.2.2.5. Utilization of xylan/ xylose]
[category|SW.2.2.2.6|2.2.2.6. Utilization of arabinan/ arabinose/ arabitol]
[category|SW.2.2.2.7|2.2.2.7. Utilization of fructose]
[category|SW.2.2.2.8|2.2.2.8. Utilization of galactose]
[category|SW.2.2.2.9|2.2.2.9. Utilization of mannose]
[category|SW.2.2.2.10|2.2.2.10. Utilization of mannitol]
[category|SW.2.2.2.11|2.2.2.11. Utilization of glucitol]
[category|SW.2.2.2.12|2.2.2.12. Utilization of rhamnose]
[category|SW.2.2.2.13|2.2.2.13. Utilization of gluconate]
[category|SW.2.2.2.14|2.2.2.14. Utilization of glucarate/galactarate]
[category|SW.2.2.2.15|2.2.2.15. Utilization of hexuronate]
[category|SW.2.2.2.16|2.2.2.16. Utilization of inositol]
[category|SW.2.2.2.17|2.2.2.17. Utilization of amino sugars]
[category|SW.2.2.2.18|2.2.2.18. Utilization of beta-glucosides]
[category|SW.2.2.2.19|2.2.2.19. Utilization of sucrose]
[category|SW.2.2.2.20|2.2.2.20. Utilization of trehalose]
[category|SW.2.2.2.21|2.2.2.21. Utilization of melibiose]
[category|SW.2.2.2.22|2.2.2.22. Utilization of maltose]
[category|SW.2.2.2.23|2.2.2.23. Utilization of starch/ maltodextrin]
[category|SW.2.2.2.24|2.2.2.24. Utilization of galactan]
[category|SW.2.2.2.25|2.2.2.25. Utilization of glucomannan]
[category|SW.2.2.2.26|2.2.2.26. Utilization of pectin]
[category|SW.2.2.2.27|2.2.2.27. Utilization of other polymeric carbohydrates]
[category|SW.2.2.2.28|2.2.2.28. Utilization of other pentoses and hexoses]
[category|SW.2.2.2.29|2.2.2.29. Utilization of allose]
[category|SW.2.3|2.3. Amino acid/ nitrogen metabolism]
[category|SW.2.3.1|2.3.1. Biosynthesis/ acquisition of amino acids]
[category|SW.2.3.1.1|2.3.1.1. Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation]
[category|SW.2.3.1.2|2.3.1.2. Biosynthesis/ acquisition of proline]
[category|SW.2.3.1.3|2.3.1.3. Biosynthesis/ acquisition of proline/ based on similarity]
[category|SW.2.3.1.4|2.3.1.4. Biosynthesis/ acquisition of arginine]
[category|SW.2.3.1.5|2.3.1.5. Biosynthesis/ acquisition of aspartate/ asparagine]
[category|SW.2.3.1.6|2.3.1.6. Biosynthesis/ acquisition of lysine/ threonine]
[category|SW.2.3.1.7|2.3.1.7. Biosynthesis/ acquisition of lysine/ threonine/ based on similarity]
[category|SW.2.3.1.8|2.3.1.8. Biosynthesis/ acquisition of serine/ glycine/ alanine]
[category|SW.2.3.1.9|2.3.1.9. Biosynthesis/ acquisition of cysteine]
[category|SW.2.3.1.10|2.3.1.10. Biosynthesis/ acquisition of methionine/ S-adenosylmethionine]
[category|SW.2.3.1.11|2.3.1.11. Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity]
[category|SW.2.3.1.12|2.3.1.12. Biosynthesis/ acquisition of branched-chain amino acids]
[category|SW.2.3.1.13|2.3.1.13. Biosynthesis/ acquisition of aromatic amino acids]
[category|SW.2.3.1.14|2.3.1.14. Biosynthesis/ acquisition of histidine]
[category|SW.2.3.2|2.3.2. Utilization of amino acids]
[category|SW.2.3.2.1|2.3.2.1. Utilization of glutamine/ glutamate]
[category|SW.2.3.2.2|2.3.2.2. Utilization of proline]
[category|SW.2.3.2.3|2.3.2.3. Utilization of proline/ based on similarity]
[category|SW.2.3.2.4|2.3.2.4. Utilization of arginine/ ornithine]
[category|SW.2.3.2.5|2.3.2.5. Utilization of histidine]
[category|SW.2.3.2.6|2.3.2.6. Utilization of asparagine/ aspartate]
[category|SW.2.3.2.7|2.3.2.7. Utilization of alanine/ serine]
[category|SW.2.3.2.8|2.3.2.8. Utilization of threonine/ glycine]
[category|SW.2.3.2.9|2.3.2.9. Utilization of branched-chain amino acids]
[category|SW.2.3.2.10|2.3.2.10. Utilization of gamma-amino butyric acid]
[category|SW.2.3.3|2.3.3. Utilization of nitrogen sources other than amino acids]
[category|SW.2.3.3.1|2.3.3.1. Utilization of nitrate/ nitrite]
[category|SW.2.3.3.2|2.3.3.2. Utilization of urea]
[category|SW.2.3.3.3|2.3.3.3. Utilization of amino sugars]
[category|SW.2.3.3.4|2.3.3.4. Utilization of peptides]
[category|SW.2.3.3.5|2.3.3.5. Utilization of proteins]
[category|SW.2.3.3.6|2.3.3.6. Utilization of ethanolamine]
[category|SW.2.3.4|2.3.4. Putative amino acid transporter]
[category|SW.2.4|2.4. Lipid metabolism]
[category|SW.2.4.1|2.4.1. Utilization of lipids]
[category|SW.2.4.1.1|2.4.1.1. Utilization of phospholipids]
[category|SW.2.4.1.2|2.4.1.2. Utilization of phospholipids/ based on similarity]
[category|SW.2.4.1.3|2.4.1.3. Utilization of fatty acids]
[category|SW.2.4.1.4|2.4.1.4. Utilization of lipids/ other]
[category|SW.2.4.2|2.4.2. Biosynthesis of lipids]
[category|SW.2.4.2.1|2.4.2.1. Biosynthesis of fatty acids]
[category|SW.2.4.2.2|2.4.2.2. Biosynthesis of phospholipids]
[category|SW.2.4.2.3|2.4.2.3. Biosynthesis of isoprenoids]
[category|SW.2.4.3|2.4.3. Lipid metabolism/ other]
[category|SW.2.5|2.5. Nucleotide metabolism]
[category|SW.2.5.1|2.5.1. Utilization of nucleotides]
[category|SW.2.5.2|2.5.2. Biosynthesis/ acquisition of nucleotides]
[category|SW.2.5.2.1|2.5.2.1. Biosynthesis/ acquisition of purine nucleotides]
[category|SW.2.5.2.2|2.5.2.2. Biosynthesis/ acquisition of purine nucleotides/ based on similarity]
[category|SW.2.5.2.3|2.5.2.3. Purine salvage and interconversion]
[category|SW.2.5.2.4|2.5.2.4. Biosynthesis/ acquisition of pyrimidine nucleotides]
[category|SW.2.5.2.5|2.5.2.5. Biosynthesis/ acquisition of nucleotides/ other]
[category|SW.2.5.2.6|2.5.2.6. Biosynthesis/ acquisition of nucleotides/ other/ based on similarity]
[category|SW.2.5.3|2.5.3. Metabolism of signalling nucleotides]
[category|SW.2.5.4|2.5.4. Nucleotide metabolism/ other]
[category|SW.2.6|2.6. Additional metabolic pathways]
[category|SW.2.6.1|2.6.1. Biosynthesis of cell wall components]
[category|SW.2.6.1.1|2.6.1.1. Biosynthesis of peptidoglycan]
[category|SW.2.6.1.2|2.6.1.2. Biosynthesis of lipoteichoic acid]
[category|SW.2.6.1.3|2.6.1.3. Biosynthesis of teichoic acid]
[category|SW.2.6.1.4|2.6.1.4. Biosynthesis of teichuronic acid]
[category|SW.2.6.1.5|2.6.1.5. Biosynthesis of the carrier lipid undecaprenylphosphate]
[category|SW.2.6.2|2.6.2. Biosynthesis of cofactors]
[category|SW.2.6.2.1|2.6.2.1. Biosynthesis/ acquisition of biotin]
[category|SW.2.6.2.2|2.6.2.2. Biosynthesis/ acquisition of riboflavin/ FAD]
[category|SW.2.6.2.3|2.6.2.3. Biosynthesis/ acquisition of thiamine]
[category|SW.2.6.2.4|2.6.2.4. Biosynthesis of coenzyme A]
[category|SW.2.6.2.5|2.6.2.5. Biosynthesis of folate]
[category|SW.2.6.2.6|2.6.2.6. Biosynthesis of heme/ siroheme]
[category|SW.2.6.2.7|2.6.2.7. Biosynthesis of lipoic acid]
[category|SW.2.6.2.8|2.6.2.8. Biosynthesis of menaquinone]
[category|SW.2.6.2.9|2.6.2.9. Biosynthesis of menaquinone/ based on similarity]
[category|SW.2.6.2.10|2.6.2.10. Biosynthesis of molybdopterin]
[category|SW.2.6.2.11|2.6.2.11. Biosynthesis of NAD(P)]
[category|SW.2.6.2.12|2.6.2.12. Biosynthesis of pyridoxal phosphate]
[category|SW.2.6.3|2.6.3. Phosphate metabolism]
[category|SW.2.6.4|2.6.4. Sulfur metabolism]
[category|SW.2.6.4.1|2.6.4.1. Conversion of S-methyl cysteine to cysteine]
[category|SW.2.6.4.2|2.6.4.2. sulfur metabolism/ general]
[category|SW.2.6.4.3|2.6.4.3. Conversion of S-(2-succino)cysteine to cysteine]
[category|SW.2.6.5|2.6.5. Iron metabolism]
[category|SW.2.6.5.1|2.6.5.1. Acquisition of iron / Other]
[category|SW.2.6.5.2|2.6.5.2. Acquisition of iron/ based on similarity]
[category|SW.2.6.5.3|2.6.5.3. Biosynthesis of iron-sulfur clusters]
[category|SW.2.6.5.4|2.6.5.4. ABC transporters for the uptake of iron/ siderophores]
[category|SW.2.6.5.5|2.6.5.5. Elemental iron transport system]
[category|SW.2.6.5.6|2.6.5.6. Iron export]
[category|SW.2.6.6|2.6.6. Miscellaneous metabolic pathways]
[category|SW.2.6.6.1|2.6.6.1. Biosynthesis of antibacterial compounds]
[category|SW.2.6.6.2|2.6.6.2. Biosynthesis of dipicolinate]
[category|SW.2.6.6.3|2.6.6.3. Biosynthesis of glycine betaine]
[category|SW.2.6.6.4|2.6.6.4. Biosynthesis of glycogen]
[category|SW.2.6.6.5|2.6.6.5. Metabolism of polyamines]
[category|SW.3|3. Information processing]
[category|SW.3.1|3.1. Genetics]
[category|SW.3.1.1|3.1.1. DNA replication]
[category|SW.3.1.2|3.1.2. DNA replication/ based on similarity]
[category|SW.3.1.3|3.1.3. DNA condensation/ segregation]
[category|SW.3.1.4|3.1.4. DNA restriction/ modification]
[category|SW.3.1.5|3.1.5. DNA repair/ recombination]
[category|SW.3.1.5.1|3.1.5.1. Excision of prophages]
[category|SW.3.1.5.2|3.1.5.2. A/P endonucleases]
[category|SW.3.1.5.3|3.1.5.3. Double strand breaks repair]
[category|SW.3.1.5.4|3.1.5.4. Oxidized guanine (GO) DNA repair system]
[category|SW.3.1.5.5|3.1.5.5. Other proteins]
[category|SW.3.1.6|3.1.6. DNA repair/ recombination/ based on similarity]
[category|SW.3.1.7|3.1.7. Genetic competence]
[category|SW.3.1.8|3.1.8. Genetics/ other/ based on similarity]
[category|SW.3.2|3.2. RNA synthesis and degradation]
[category|SW.3.2.1|3.2.1. Transcription]
[category|SW.3.2.1.1|3.2.1.1. RNA polymerase]
[category|SW.3.2.1.2|3.2.1.2. Sigma factors]
[category|SW.3.2.1.3|3.2.1.3. Transcription elongation/ termination]
[category|SW.3.2.1.4|3.2.1.4. Prophage/ phage transcription]
[category|SW.3.2.2|3.2.2. RNA chaperones]
[category|SW.3.2.3|3.2.3. RNA helicases]
[category|SW.3.2.4|3.2.4. RNases]
[category|SW.3.2.4.1|3.2.4.1. Exoribonucleases]
[category|SW.3.2.4.2|3.2.4.2. Endoribonucleases]
[category|SW.3.2.4.3|3.2.4.3. RNA pyrophosphohydrolase]
[category|SW.3.2.4.4|3.2.4.4. RNases/ Other]
[category|SW.3.2.5|3.2.5. RNase/ based on similarity]
[category|SW.3.3|3.3. Protein synthesis, modification and degradation]
[category|SW.3.3.1|3.3.1. Translation]
[category|SW.3.3.1.1|3.3.1.1. Ribosomal RNA]
[category|SW.3.3.1.2|3.3.1.2. rRNA modification and maturation]
[category|SW.3.3.1.3|3.3.1.3. rRNA modification and maturation/ based on similarity]
[category|SW.3.3.1.4|3.3.1.4. Ribosomal proteins]
[category|SW.3.3.1.5|3.3.1.5. Ribosomal protein/ based on similarity]
[category|SW.3.3.1.6|3.3.1.6. Ribosome assembly]
[category|SW.3.3.1.7|3.3.1.7. tRNA]
[category|SW.3.3.1.8|3.3.1.8. tRNA modification and maturation]
[category|SW.3.3.1.9|3.3.1.9. tRNA modification and maturation/ based on similarity]
[category|SW.3.3.1.10|3.3.1.10. Aminoacyl-tRNA synthetases]
[category|SW.3.3.1.11|3.3.1.11. Translation factors]
[category|SW.3.3.1.12|3.3.1.12. Translation/ other]
[category|SW.3.3.1.13|3.3.1.13. Translation/ other/ based on similarity]
[category|SW.3.3.1.14|3.3.1.14. Translation factor modification and maturation]
[category|SW.3.3.2|3.3.2. Chaperones/ protein folding]
[category|SW.3.3.3|3.3.3. Chaperone/ protein folding/ based on similarity]
[category|SW.3.3.4|3.3.4. Protein modification]
[category|SW.3.3.4.1|3.3.4.1. Protein maturation]
[category|SW.3.3.4.2|3.3.4.2. Protein kinases]
[category|SW.3.3.4.3|3.3.4.3. Protein kinase/ based on similarity]
[category|SW.3.3.4.4|3.3.4.4. Protein phosphatases]
[category|SW.3.3.4.5|3.3.4.5. Protein acetylases/ deacetylases]
[category|SW.3.3.4.6|3.3.4.6. Protein acetylase/ deacetylase/ based on similarity]
[category|SW.3.3.4.7|3.3.4.7. Protein deaminase]
[category|SW.3.3.4.8|3.3.4.8. Protein modification/ other]
[category|SW.3.3.5|3.3.5. Protein secretion]
[category|SW.3.3.6|3.3.6. Protein secretion/ based on similarity]
[category|SW.3.3.7|3.3.7. Proteolysis]
[category|SW.3.3.7.1|3.3.7.1. Protein quality control]
[category|SW.3.3.7.2|3.3.7.2. Extracellular feeding proteases]
[category|SW.3.3.7.3|3.3.7.3. Additional proteins involved in proteolysis]
[category|SW.3.4|3.4. Regulation of gene expression]
[category|SW.3.4.1|3.4.1. Sigma factors and their control]
[category|SW.3.4.1.1|3.4.1.1. Sigma factors]
[category|SW.3.4.1.2|3.4.1.2. Control of sigma factors (SigmaB)]
[category|SW.3.4.2|3.4.2. Transcription factors and their control]
[category|SW.3.4.2.1|3.4.2.1. Two-component system response regulators]
[category|SW.3.4.2.2|3.4.2.2. Control of two-component response regulators]
[category|SW.3.4.2.2.1|3.4.2.2.1. Two-component sensor kinase]
[category|SW.3.4.2.2.2|3.4.2.2.2. Response regulator aspartate phosphatase]
[category|SW.3.4.2.2.3|3.4.2.2.3. Control of response regulators/ other]
[category|SW.3.4.2.3|3.4.2.3. PRD-type regulators]
[category|SW.3.4.2.4|3.4.2.4. Control of PRD-type regulators]
[category|SW.3.4.2.5|3.4.2.5. Transcription factors/ other]
[category|SW.3.4.2.6|3.4.2.6. Transcription factor/ other/ based on similarity]
[category|SW.3.4.2.7|3.4.2.7. Control of transcription factor (other than two-component system)]
[category|SW.3.4.3|3.4.3. Trigger enzyme]
[category|SW.3.4.3.1|3.4.3.1. Trigger enzymes of the PTS that control the activity of PRD-containing transcription factors]
[category|SW.3.4.3.2|3.4.3.2. Trigger enzymes that control gene expression by protein-protein interaction with transcription factors]
[category|SW.3.4.3.3|3.4.3.3. Trigger enzymes that act directly as transcription factors by binding DNA]
[category|SW.3.4.3.4|3.4.3.4. Trigger enzyme that acts by binding of a specific RNA element]
[category|SW.3.4.3.5|3.4.3.5. Trigger enzymes that control transcription in a yet unknown way]
[category|SW.3.4.4|3.4.4. RNA binding regulators]
[category|SW.3.4.5|3.4.5. Regulators of core metabolism]
[category|SW.3.4.6|3.4.6. Transition state regulators]
[category|SW.3.4.7|3.4.7. Quorum sensing]
[category|SW.3.4.8|3.4.8. Other regulators]
[category|SW.4|4. Lifestyles]
[category|SW.4.1|4.1. Exponential and early post-exponential lifestyles]
[category|SW.4.1.1|4.1.1. Motility and chemotaxis]
[category|SW.4.1.1.1|4.1.1.1. Signal transduction in motility and chemotaxis]
[category|SW.4.1.1.1.1|4.1.1.1.1. Soluble signalling proteins]
[category|SW.4.1.1.1.2|4.1.1.1.2. Coupling proteins]
[category|SW.4.1.1.1.3|4.1.1.1.3. Soluble chemoreceptors]
[category|SW.4.1.1.1.4|4.1.1.1.4. Membrane-bound chemoreceptors]
[category|SW.4.1.1.1.5|4.1.1.1.5. Additional chemotaxis signal transduction and regulatory proteins]
[category|SW.4.1.1.2|4.1.1.2. Flagellar proteins]
[category|SW.4.1.1.2.1|4.1.1.2.1. Filament]
[category|SW.4.1.1.2.2|4.1.1.2.2. Hook]
[category|SW.4.1.1.2.3|4.1.1.2.3. Stator]
[category|SW.4.1.1.2.4|4.1.1.2.4. Basal body]
[category|SW.4.1.1.2.5|4.1.1.2.5. Secretion apparatus]
[category|SW.4.1.1.2.6|4.1.1.2.6. MS-ring]
[category|SW.4.1.1.2.7|4.1.1.2.7. C-ring]
[category|SW.4.1.1.3|4.1.1.3. Flagellar proteins/ based on similarity]
[category|SW.4.1.1.4|4.1.1.4. Motility and chemotaxis/ other]
[category|SW.4.1.2|4.1.2. Biofilm formation]
[category|SW.4.1.2.1|4.1.2.1. Matrix polysaccharide synthesis]
[category|SW.4.1.2.2|4.1.2.2. Regulation]
[category|SW.4.1.2.3|4.1.2.3. Other proteins required for biofilm formation]
[category|SW.4.1.3|4.1.3. Genetic competence]
[category|SW.4.1.4|4.1.4. Swarming]
[category|SW.4.1.5|4.1.5. Sliding]
[category|SW.4.2|4.2. Lifestyles/ miscellaneous]
[category|SW.4.2.1|4.2.1. General stress proteins (controlled by SigB)]
[category|SW.4.2.2|4.2.2. Universal stress proteins]
[category|SW.4.2.3|4.2.3. Acid stress proteins]
[category|SW.4.2.4|4.2.4. Heat shock proteins]
[category|SW.4.2.4.1|4.2.4.1. Class I heat shock proteins (HrcA-dependent)]
[category|SW.4.2.4.2|4.2.4.2. Class II heat shock proteins (SigB-dependent)]
[category|SW.4.2.4.3|4.2.4.3. Class III heat shock proteins (CtsR-dependent)]
[category|SW.4.2.4.4|4.2.4.4. Class IV heat shock proteins (other)]
[category|SW.4.2.5|4.2.5. Cold stress proteins]
[category|SW.4.2.6|4.2.6. Coping with hyper-osmotic stress]
[category|SW.4.2.7|4.2.7. Coping with hypo-osmotic stress]
[category|SW.4.2.8|4.2.8. Resistance against oxidative and electrophile stress]
[category|SW.4.2.9|4.2.9. Resistance against oxidative and electrophile stress/ based on similarity]
[category|SW.4.2.10|4.2.10. Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]
[category|SW.4.2.11|4.2.11. Resistance against toxic metals]
[category|SW.4.2.11.1|4.2.11.1. Resistance against copper ions]
[category|SW.4.2.12|4.2.12. Resistance against toxic metals/ based on similarity]
[category|SW.4.2.13|4.2.13. Resistance against toxins/ antibiotics]
[category|SW.4.2.13.1|4.2.13.1. Resistance against antibiotics]
[category|SW.4.2.13.1.1|4.2.13.1.1. Nisin resistance]
[category|SW.4.2.13.1.2|4.2.13.1.2. Fosfomycin resistance]
[category|SW.4.2.13.1.3|4.2.13.1.3. Cephalosporin resistance]
[category|SW.4.2.13.1.4|4.2.13.1.4. Fluoroquinolone resistance]
[category|SW.4.2.13.1.5|4.2.13.1.5. Aurantimycin resistance]
[category|SW.4.2.13.1.6|4.2.13.1.6. Rifampicin resistance]
[category|SW.4.2.13.1.7|4.2.13.1.7. Tartrolon B resistance]
[category|SW.4.2.14|4.2.14. Resistance against toxins/ antibiotics/ based on similarity]
[category|SW.4.2.15|4.2.15. Toxins, antitoxins and immunity against toxins]
[category|SW.4.2.16|4.2.16. Toxins, antitoxins and immunity against toxins/ based on similarity]
[category|SW.4.2.17|4.2.17. Bile salt resistance]
[category|SW.4.2.18|4.2.18. Resistance against disinfectants]
[category|SW.4.2.18.1|4.2.18.1. Resistance against quarternary ammonium compounds]
[category|SW.4.3|4.3. Virulence]
[category|SW.4.3.1|4.3.1. LIPI-1]
[category|SW.4.3.2|4.3.2. internalins]
[category|SW.4.3.3|4.3.3. intracellular growth/survival]
[category|SW.4.3.4|4.3.4. vacuolar escape]
[category|SW.4.3.5|4.3.5. immune escape]
[category|SW.4.3.6|4.3.6. organ-specific targeting factors]
[category|SW.4.3.6.1|4.3.6.1. targeting of the brain]
[category|SW.4.3.6.2|4.3.6.2. targeting of the placenta]
[category|SW.4.3.7|4.3.7. other/undefined functions]
[category|SW.5|5. Prophages, mobile genetic elements, genomic islands]
[category|SW.5.1|5.1. Prophages]
[category|SW.5.1.1|5.1.1. Phage region I (nt 120654-131380)]
[category|SW.5.1.2|5.1.2. Phage region II (phage A118) at comK (nt 2360908-2403235)]
[category|SW.5.2|5.2. Mobile genetic elements]
[category|SW.5.2.1|5.2.1. insertion sequence ISSau4 (IS3 family/IS150 group) nt172046-173271]
[category|SW.5.2.2|5.2.2. insertion sequence ISLmo1 (IS3 family/IS150 group) nt356504-357731]
[category|SW.5.2.3|5.2.3. insertion sequence ISLse4 (IS3 family/IS150 group) nt854380-855607]
[category|SW.5.2.4|5.2.4. orphan transposase genes]
[category|SW.5.3|5.3. Genomic islands]
[category|SW.5.3.1|5.3.1. Stress survival islet 1]
[category|SW.6|6. Groups of genes]
[category|SW.6.1|6.1. Essential genes]
[category|SW.6.2|6.2. Membrane proteins]
[category|SW.6.3|6.3. GTP-binding proteins]
[category|SW.6.4|6.4. Phosphoproteins]
[category|SW.6.4.1|6.4.1. Phosphorylation on an Arg residue]
[category|SW.6.4.2|6.4.2. Phosphorylation on an Asp residue]
[category|SW.6.4.3|6.4.3. Phosphorylation on a Cys residue]
[category|SW.6.4.4|6.4.4. Phosphorylation on a His residue]
[category|SW.6.4.5|6.4.5. Phosphorylation on a Ser residue]
[category|SW.6.4.6|6.4.6. Phosphorylation on a Thr residue]
[category|SW.6.4.7|6.4.7. Phosphorylation on a Tyr residue]
[category|SW.6.4.8|6.4.8. Phosphorylation on either a Ser, Thr or Tyr residue]
[category|SW.6.4.9|6.4.9. Phosphoproteins / Other]
[category|SW.6.5|6.5. Universally conserved proteins]
[category|SW.6.6|6.6. Poorly characterized/ putative enzymes]
[category|SW.6.7|6.7. Proteins of unknown function]
[category|SW.6.8|6.8. NcRNA]
[category|SW.6.8.1|6.8.1. 6S RNA]
[category|SW.6.8.2|6.8.2. tmRNA]
[category|SW.6.8.3|6.8.3. Small cytoplasmatic RNA]
[category|SW.6.8.4|6.8.4. RNA component of RNase P]
[category|SW.6.8.5|6.8.5. Regulatory RNAs]
[category|SW.6.8.6|6.8.6. Antisense RNAs of toxin/antitoxin systems]
[category|SW.6.8.7|6.8.7. Small RNAs with unknown functions]
[category|SW.6.9|6.9. Pseudogenes]
[category|SW.6.10|6.10. Efp-dependent proteins]
[category|SW.6.11|6.11. Secreted proteins]
[category|SW.6.12|6.12. LPXTG proteins]
[category|SW.6.13|6.13. GW proteins]
[category|SW.6.14|6.14. LysM proteins]
[category|SW.6.15|6.15. Lipoproteins]